Open-source contributions to advance neuroimaging research.
Breakthrough noise reduction for high-resolution diffusion MRI. 11x noise floor reduction, multi-channel complex-valued data processing, optimal shrinkage of singular values.
If you use this tool, please citeHuynh, K. M., Chang, W. T., Wu, Y., & Yap, P. T. (2024). Optimal shrinkage denoising breaks the noise floor in high-resolution diffusion MRI. Patterns, 5(3), 100954.
Comprehensive toolkit for diffusion MRI analysis. Microstructure modeling, tractography, and developmental analysis. Works with existing neuroimaging software.
Normative brain charts for pediatric applications. Height/weight chart equivalent for brain development. Applications in early detection of developmental issues.
Healthy adult 24-shell diffusion MRI dataset. Preprocessed with dcm2niix, eddy and topup via dwifslpreproc. See data.json for acquisition parameters. Available under MIT License.
If you use this dataset, please citeHuynh, K. M., Xu, T., Wu, Y., Wang, X., Chen, G., Wu, H., Thung, K.-H., Lin, W., Shen, D., & Yap, P.-T. (2020). Probing tissue microarchitecture of the baby brain via spherical mean spectrum imaging. IEEE Transactions on Medical Imaging, 39(11), 3607-3618.
Contact me to discuss collaborative development.