Khoi Huynh

Publications

66 entries

Journals (12)

2026

Functional hierarchy of the human neocortex across the lifespan

Hoyt Taylor, Khoi Huynh, Kim-Han Thung, Guoye Lin, Wenjiao Lyu, Weili Lin, Sahar Ahmad, Pew-Thian Yap

Nature
2026

The shifting landscape of brain-wide myelination across the human lifespan

Sahar Ahmad, Khoi Huynh, Guoye Lin, Pew-Thian Yap

Nature Communications
2025

Functional development of the human cerebellum from birth to age five

Wenjiao Lyu, Kim-Han Thung, Khoi Huynh, Li Wang, Weili Lin, Sahar Ahmad, Pew-Thian Yap

Nature Communications
2025

The effective connectome over a century of human life

Guoshi Li, Khoi Huynh, Kim-Han Thung, Hoyt Taylor IV, Guoye Lin, Weili Lin, Sahar Ahmad, Pew-Thian Yap

Communications Biology
2025

Anatomy-to-tract mapping infers white matter pathways without diffusion streamline propagation

Yee-Fan Tan, Khoi Huynh, Siyuan Liu, Raphaël Phan, Chee-Ming Ting, Pew-Thian Yap

Nature Communications
2024

A multimodal submillimeter MRI atlas of the human cerebellum

Wenjiao Lyu, Ye Wu, Khoi Huynh, Sahar Ahmad, Pew-Thian Yap

Scientific Reports
2024

Optimal shrinkage denoising breaks the noise floor in high-resolution diffusion MRI

Khoi Huynh, Wei-Tang Chang, Ye Wu, Pew-Thian Yap

Patterns
2023

Deep learning prediction of diffusion MRI data with microstructure-sensitive loss functions

Geng Chen, Yoonmi Hong, Khoi Huynh, Pew-Thian Yap

Medical image analysis
2023

Feasibility of free-breathing 19F MRI image acquisition to characterize ventilation defects in CF and healthy volunteers at wash-in

Sang Chung, Khoi Huynh, Jennifer Goralski, Yong Chen, Pew-Thian Yap, Agathe Ceppe, Margret Powell, Scott Donaldson, Yueh Lee

Magnetic Resonance in Medicine
2022

Rapid Diffusion Magnetic Resonance Imaging Using Slice-Interleaved Encoding

Tiantian Xu, Ye Wu, Yoonmi Hong, Sahar Ahmad, Khoi Huynh, Zhixing Wang, Weili Lin, Wei-Tang Chang, Pew-Thian Yap

Medical Image Analysis
2020

Probing Tissue Microarchitecture of the Baby Brain via Spherical Mean Spectrum Imaging

Khoi Huynh, Tiantian Xu, Ye Wu, Xifeng Wang, Geng Chen, Haiyong Wu, Kim-Han Thung, Weili Lin, Dinggang Shen, Pew-Thian Yap

IEEE Transactions on Medical Imaging
2019

Multi-site harmonization of diffusion mri data via method of moments

Khoi Huynh, Geng Chen, Ye Wu, Dinggang Shen, Pew-Thian Yap

IEEE transactions on medical imaging

Conferences (12)

2023

Microstructure Fingerprinting for Heterogeneously Oriented Tissue Microenvironments

Khoi Huynh, Ye Wu, Sahar Ahmad, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention
2023

Relaxation-Diffusion Spectrum Imaging for Probing Tissue Microarchitecture

Ye Wu, Xiaoming Liu, Xinyuan Zhang, Khoi Huynh, Sahar Ahmad, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention
2021

Noise mapping and removal in complex-valued multi-channel MRI via optimal shrinkage of singular values

Khoi Huynh, Wei-Tang Chang, Sang Chung, Yong Chen, Yueh Lee, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention
2021

Image Reconstruction from Accelerated Slice-Interleaved Diffusion Encoding Data

Tiantian Xu, Ye Wu, Yoonmi Hong, Khoi Minh Huynh, Weili Lin, Wei-Tang Chang, Pew-Thian Yap

Computational Diffusion MRI: International MICCAI Workshop, Lima, Peru, October 2020
2021

Longitudinal Parcellation of the Infant Cortex Using Multi-modal Connectome Harmonics

Hoyt Taylor, Sahar Ahmad, Ye Wu, Khoi Huynh, Zhen Zhou, Zhengwang Wu, Weili Lin, Li Wang, Gang Li, Han Zhang, others

Computational Diffusion MRI: International MICCAI Workshop, Lima, Peru, October 2020
2020

Characterizing intra-soma diffusion with spherical mean spectrum imaging

Khoi Huynh, Ye Wu, Kim-Han Thung, Sahar Ahmad, Hoyt Taylor IV, Dinggang Shen, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention
2020

Estimating tissue microstructure with undersampled diffusion data via graph convolutional neural networks

Geng Chen, Yoonmi Hong, Yongqin Zhang, Jaeil Kim, Khoi Huynh, Jiquan Ma, Weili Lin, Dinggang Shen, Pew-Thian Yap, UNC/UMN Consortium

International Conference on Medical Image Computing and Computer-Assisted Intervention
2020

Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts

Sahar Ahmad, Ye Wu, Khoi Huynh, Kim-Han Thung, Weili Lin, Dinggang Shen, Pew-Thian Yap, UNC/UMN Consortium

International Conference on Medical Image Computing and Computer-Assisted Intervention
2019

Longitudinal Harmonization for Improving Tractography in Baby Diffusion MRI

Khoi Huynh, Jaeil Kim, Geng Chen, Ye Wu, Dinggang Shen, Pew-Thian Yap

Computational Diffusion MRI: MICCAI Workshop
2019

Characterizing non-gaussian diffusion in heterogeneously oriented tissue microenvironments

Khoi Huynh, Tiantian Xu, Ye Wu, Kim-Han Thung, Geng Chen, Weili Lin, Dinggang Shen, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention
2019

Probing brain micro-architecture by orientation distribution invariant identification of diffusion compartments

Khoi Huynh, Tiantian Xu, Ye Wu, Geng Chen, Kim-Han Thung, Haiyong Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap, UNC/UMN Consortium

International Conference on Medical Image Computing and Computer-Assisted Intervention
2018

Longitudinal Harmonization of Baby Diffusion MRI Data

Khoi Huynh, Jaeil Kim, Geng Chen, Dinggang Shen, Pew-Thian Yap

Proceedings of the Organization of Human Brain Mapping Annual Meeting

Preprints (3)

2025

Ultimatesynth: MRI physics for pan-contrast ai

Rhea Adams, Khoi Huynh, Walter Zhao, Siyuan Hu, Wenjiao Lyu, Sahar Ahmad, Dan Ma, Pew-Thian Yap

bioRxiv
2022

Cross-layer Balance of Visuo-hippocampal Functional Connectivity Is Associated With Episodic Memory Recognition Accuracy

Wei-Tang Chang, Stephanie Langella, Min Seo, Khoi Huynh, Pew-Thian Yap, Weili Lin, Kelly Giovanello

arXiv preprint
2020

Navigator-Free Submillimeter Diffusion Imaging using Multishot-encoded Simultaneous Multi-slice (MUSIUM)

Wei-Tang Chang, Khoi Huynh, Pew-Thian Yap, Weili Lin

arXiv preprint arXiv:2012.00664

Abstracts (38)

2026

Surface Mapping of Cerebellar Microstructure in Infancy

Xinqi Xiong, Khoi Huynh, Junjie Zhao, Sahar Ahmad, Pew-Thian Yap

Proceedings of the Society for Neuroscience (SfN) Annual Meeting
2026

Distinct Structure–Function Coupling Patterns in Cortical Gyri and Sulci During Early Brain Development

Jiarui Mao, Khoi Huynh, Kim-Han Thung, Sahar Ahmad, Pew-Thian Yap

Proceedings of the Society for Neuroscience (SfN) Annual Meeting
2026

Superficial White Matter Maturation in Early Childhood

Khoi Huynh, Sahar Ahmad, Pew-Thian Yap

Proceedings of the Society for Neuroscience (SfN) Annual Meeting
2026

Mapping Superficial White Matter Pathways in the Developing Brain

Khoi Huynh, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society for Tractography Meeting
2025

Pan-Contrast Learning of MRI Segmentation for Healthy and Anomaly Cases: Faithful to Tissue Properties and MR Physics

Rhea Adams, Walter Zhao, Siyuan Hu, Wenjiao Lyu, Khoi Huynh, Sahar Ahmad, Dan Ma, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2025

Mapping Cortical Flexibility in Infancy Using Multiscale Functional Connectivity Gradients

H Taylor, Khoi Minh-Huynh, Kim-Han Thung, Guoye Lin, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2025

Anatomy to Tract Mapping: A Repeatability Study

Yee Tan, Siyuan Liu, Khoi Huynh, Raphaël Phan, Chee-Ming Ting, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2025

Holistic brain functional parcellation in young children

Kimhan Thung, Wenjiao Lyu, Khoi Huynh, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2025

Structural Gradients of the Developing Brain Connectome

Juhyun Lee, Khoi Huynh, Hoyt Taylor, Jiarui Mao, Guoye Lin, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2025

Emerging Patterns of Thalamocortical Connectivity in Early Brain Development

Wenjiao Lyu, Kim-Han Thung, Khoi Huynh, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2025

Precision Cortex Tractography for the Developing Brain

Khoi Huynh, Sahar Ahmad, Guoye Lin, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2025

Dynamic Shifts in Controllability of White Matter Networks in Early Brain Development

Son Nguyen, Khoi Huynh, Guoye Lin, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2025

Precision Functional Gradients via Optimal Shrinkage Denoising

Jiarui Mao, Khoi Huynh, Kim-Han Thung, Hoyt Taylor, Guoye Lin, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2025

Lifespan Mapping of the Human Cerebellum: Tissue Segmentation and Surface Reconstruction

Guoye Lin, Junjie Zhao, Khoi Huynh, Wenjiao Lyu, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2024

Temporal profile block-matching denoising enables free-breathing dynamic 19F lung MRI with sub 0.5 second acquisition time

Truc Nguyen, Khoi Huynh, Sang Chung, Pew-Thian Yap, Yueh Lee

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2024

Cell radius and membrane permeability in the developing brain

Khoi Huynh, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2023

Lung Multi-Breath Wash in/out MRI with 19F with Sub 0.5 Second Scan Time

Sang Chung, Khoi Huynh, Yong Chen, Pew-Thian Yap, Jennifer Goralski, Scott Donaldson, Yueh Lee

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2023

A Multimodal Atlas of the Human Cerebellum at 760 μm Resolution

Wenjiao Lyu, Ye Wu, Khoi Huynh, Sahar Ahmad, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2023

Multidimensional optimal denoising with block matching is robust to misalignment and contrast changes

Khoi Huynh, Sang Chung, Yueh Lee, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2022

Brainwide functional networks associated with hippocampal subfields during memory task using fMRI with 1-mm isotropic resolution

Wei-Tang Chang, Stephanie Langella, Khoi Huynh, Min Seo, Pew-Thian Yap, Weili Lin, Kelly Giovanello

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2022

Feasibility of VDP Calculation using 19 F Free Breathing Spiral Acquisition with Post-Acquisition Denoising

Sang Chung, Khoi Huynh, Yong Chen, Pew-Thian Yap, Jennifer Goralski, Scott Donaldson, Yueh Lee

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2022

COMEDI: A Toolkit for Lifespan Computational Diffusion MRI

Ye Wu, Sahar Ahmad, Khoi Huynh, Tiantian Xu, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2022

Ventilation defect percentage comparison between spiral with post-acquisition denoising and cartesian acquisition for 19F lung magnetic resonance imaging

S Chung, K Huynh, Y Chen, P Yap, J Goralski, S Donaldson, Y Lee

Journal of Cystic Fibrosis
2022

A data-driven variability assessment of brain diffusion MRI preprocessing pipelines

Jelle Veraart, Daan Christiaens, Erpeng Dai, Luke Edwards, Vladimir Golkov, Siawoosh Mohammadi, Kurt Schilling, Mohammad Aarabi, Benjamin Ades-Aron, Nagesh Adluru, others

Proc. 30th Annual Meeting of the ISMRM, Online
2021

Noise Removal from Multi-channel Complex-valued Diffusion-weighted Images via Optimal Shrinkage of Singular Values

Khoi Huynh, Wei-Tang Chang, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2021

Quantifying Cell Size and Membrane Permeability with Microstructure Fingerprinting

Khoi Huynh, Ye Wu, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2021

An Automated Processing Pipeline for Diffusion MRI in the Baby Connectome Project

Ye Wu, Sahar Ahmad, Khoi Huynh, Siyuan Liu, Kim-Han Thung, Weili Lin, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2021

Reducing Noise in Complex-Valued Multi-Channel Diffusion-Weighted Data via Optimal Shrinkage of Singular Values

Khoi Huynh, Wei-Tang Chang, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2021

Navigator-Free Submillimeter Diffusion MRI using Multishot-encoded Simultaneous Multi-slice (MUSIUM) Imaging

Wei-Tang Chang, Khoi Huynh, Pew-Thian Yap, Weili Lin

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2020

Quantifying Intra-Soma Diffusion Properties via Spherical Mean Spectrum Imaging

Khoi Huynh, Ye Wu, Kim-Han Thung, Sahar Ahmad, Hoyt Taylor IV, Weili Lin, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2020

Tackling Degeneracy in Linear Tensor Encoding Diffusion MRI

Khoi Huynh, Ye Wu, Hoyt Taylor IV, Weili Lin, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2020

Multivariate Quantification of Brain Development During the First Two Years of Life

Khoi Huynh, Ye Wu, Kim-Han Thung, Sahar Ahmad, Hoyt Taylor IV, Weili Lin, Pew-Thian Yap

Proceedings of the Organization of Human Brain Mapping (OHBM) Annual Meeting
2020

Correlation of Myelin Content and Neurite Density in the Early Developing Human Cortex

Khoi Huynh, Sahar Ahmad, Ye Wu, Kim-Han Thung, Zhengwang Wu, Weili Lin, Han Zhang, Li Wang, Gang Li, Pew-Thian Yap

Proceedings of the Organization of Human Brain Mapping (OHBM) Annual Meeting
2020

Dense Temporal Mapping of Cortical Microstructure in the Early Developing Brain.

Khoi Huynh, Ye Wu, Kim-Han Thung, Sahar Ahmad, Zhengwang Wu, Weili Lin, Han Zhang, Li Wang, Gang Li, Pew-Thian Yap

Proceedings of the Organization of Human Brain Mapping (OHBM) Annual Meeting
2019

Biases of Microstructure Models in Baby Diffusion MRI

Khoi Huynh, Ye Wu, Kim-Han Thung, Geng Chen, Weili Lin, Dinggang Shen, Pew-Thian Yap, for UNC/UMN Baby Connectome Project Consortium.

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting
2019

Dense Mapping of Microstructural Development in the Human Brain During the First Two Years of Life.

Khoi Huynh, Ye Wu, Kim-Han Thung, Geng Chen, Weili Lin, Dinggang Shen, Pew-Thian Yap, for UNC/UMN Baby Connectome Project Consortium.

Proceedings of the Organization of Human Brain Mapping (OHBM) Annual Meeting
2019

Quantifying Tissue Microstructure Non-Gaussianity in the Presence of Fiber Dispersion

Khoi Huynh, Ye Wu, Geng Chen, Kim-Han Thung, Weili Lin, Dinggang Shen, Pew-Thian Yap

Proceedings of the Radiological Society of North America (RSNA) Annual Meeting
2018

Spatially Varying Signal-Drift Correction in Diffusion MRI

Khoi Huynh, Geng Chen, Wei-Tang Chang, Weili Lin, Dinggang Shen, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting

Other (1)

2022

Computational Tools For Studying Microstructural Development Of The Human Brain With Diffusion Magnetic Resonance Imaging

Khoi Huynh

University of North Carolina at Chapel Hill
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